PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019692m
Common NameEUTSA_v10019692mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 277aa    MW: 31310.4 Da    PI: 8.7756
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019692mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.12.6e-0911371440
                     HHHHHHHHHHHHHHHHHHT-EEEEEEE CS
           SRF-TF 14 skRrngilKKAeELSvLCdaevaviif 40
                      k ++gilKK +E+S+LC++ ++ ii+
  Thhalv10019692m 11 KKTKKGILKKVKEISTLCGVTACAIIY 37
                     5789*********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0044149IPR002100Transcription factor, MADS-box
PfamPF003194.4E-71039IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-121084IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MTRKKESNLL KKTKKGILKK VKEISTLCGV TACAIIYRPY MSNPDVWPSI SGVQKVVLDF  60
RTLSEMGQHK KMVDQETFLR QRIAKLSENL RRLGKANREQ EMIEVMFQCW DGSLWRFHLN  120
ILDLNDLGYI EILGSSSMEM GESSNTAVTA AMAHSFEGIG SLAVASATTA PAAPALTIHE  180
VYSSSSSAVA ATFFNSIQQQ QQFLHPVTPH HMDNRHNPNL HNPFHHHQHQ HHYHYHYHQQ  240
QQQQISNDSY TALTTVSSSS VIHVTSPNPT NNIWFY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019692m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391379.11e-112agamous-like MADS-box protein AGL80
SwissprotQ9FJK37e-67AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLV4MBN10.0V4MBN1_EUTSA; Uncharacterized protein
STRINGXP_006391310.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-55AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]