PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019681m
Common NameEUTSA_v10019681mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 322aa    MW: 36591.1 Da    PI: 7.1909
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019681mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.51.3e-161050242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     +ien+s  + tf kR++gilKK +E+S+LC+a ++ ii+s+
  Thhalv10019681m 10 FIENNSSSKATFQKRKKGILKKVKEISTLCGATACAIIYSP 50
                     8**************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.428149IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-18160IPR002100Transcription factor, MADS-box
CDDcd002662.67E-26282No hitNo description
PRINTSPR004047.1E-7323IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-20391IPR002100Transcription factor, MADS-box
PfamPF003196.0E-151051IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MTKMKVKLAF IENNSSSKAT FQKRKKGILK KVKEISTLCG ATACAIIYSP YTSNPDIWPS  60
TSGVRRVVSD FRTLPEMDQQ KKCIAKLSEN LMRLEKDNRE QEMIEVMFQC WDVSLERFHL  120
NILDLNDLGY VIEQYQKDIN RKIEILESSS MEMGESSNTA VIAAMAHSFE GIGSLAVASA  180
TTAPAATIHE VYSSSSSAAA ATFFNSIQQQ QHHHQHQQFR HPATPHVGFY EQTRNINLNQ  240
IHNRIQQQPF MEMMNHPDQM SDAYEHMDNR HNPNLHNPFH QHQHQQQQQI PSDSSTALTT  300
VSSNSIIHVT SPNPTNNTWF H*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019681m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391378.11e-178agamous-like MADS-box protein AGL80
RefseqXP_006391380.11e-178agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-96AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLV4JTT40.0V4JTT4_EUTSA; Uncharacterized protein
STRINGXP_006391454.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-81AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]