PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019481m
Common NameEUTSA_v10019481mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 125aa    MW: 14524 Da    PI: 10.3809
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019481mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.97.4e-151050242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     +i n+s r+ tf kR++ +lKK +ELS+ C++ ++ ii+ss
  Thhalv10019481m 10 FIANDSSRKKTFKKRKKRLLKKVKELSTFCGISACAIIYSS 50
                     899*************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.311150IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-16160IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-5323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-18478IPR002100Transcription factor, MADS-box
PfamPF003199.5E-151050IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MNLRKVKLAF IANDSSRKKT FKKRKKRLLK KVKELSTFCG ISACAIIYSS YDSNPEVWPS  60
NSGMDQHKKI VDHETFLRQR IAKASEHLKR HGKDNMEQKM IEVMLQCLVG SLEIFHLNTM  120
DLNDL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125KKRKK
22533KRLLKKVKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019481m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391455.12e-56agamous-like MADS-box protein AGL80
SwissprotQ9FJK39e-54AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLV4KNF29e-88V4KNF2_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006391557.11e-88(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-47AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]