PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018853m
Common NameEUTSA_v10018853mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 329aa    MW: 37711.9 Da    PI: 6.3177
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018853mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.94.1e-5391371128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      +ppGfrFhPt+eelv +yL++k+++ k  l +vi e+d+yk+ePwd+++     ++e++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk+
  Thhalv10018853m   9 MPPGFRFHPTEEELVGYYLERKINSMKSAL-DVIVEIDLYKMEPWDIQArckLGYEEQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKA 101
                      79*************************887.99**************953432233677*********************************** PP

              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      vls k++++g++ktLv+ykgrap+g+k+dW+mheyrl
  Thhalv10018853m 102 VLS-KNSVIGMRKTLVYYKGRAPNGRKSDWIMHEYRL 137
                      ***.8889***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-594158IPR003441NAC domain
PROSITE profilePS5100557.4789158IPR003441NAC domain
PfamPF023655.5E-2810137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009741Biological Processresponse to brassinosteroid
GO:0045491Biological Processxylan metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:0050832Biological Processdefense response to fungus
GO:0071365Biological Processcellular response to auxin stimulus
GO:0090059Biological Processprotoxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDSIMQSCMP PGFRFHPTEE ELVGYYLERK INSMKSALDV IVEIDLYKME PWDIQARCKL  60
GYEEQNEWYF FSHKDRKYPT GTRTNRATAA GFWKATGRDK AVLSKNSVIG MRKTLVYYKG  120
RAPNGRKSDW IMHEYRLQNS ELAPVQEEGW VVCRAFRKPI PNQRPLGYEP WQNQLYHVDS  180
SNNYSSSPTM NTSHHIGASS SSHNLNQMLM SNNHFSTSNA SSSMHQYGNI ELPQLDSPSL  240
SPSLGTNKDQ NESFEQEEEK SFNCVDWRTL DSLLETQVTH PQNPNVLMSP FETQSYHPGP  300
SYDIVSMHQN YNDVEANIHQ SLGCFPDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-4921588168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00017PBMTransfer from AT1G71930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0264470.0BT026447.1 Arabidopsis thaliana At1g71930 mRNA, complete cds.
GenBankAY0854240.0AY085424.1 Arabidopsis thaliana clone 151034 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390727.10.0hypothetical protein EUTSA_v10018853mg
SwissprotQ9C8W90.0NAC30_ARATH; NAC domain-containing protein 30
TrEMBLV4KL770.0V4KL77_EUTSA; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_20011960.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69502744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.10.0vascular related NAC-domain protein 7