PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017751m
Common NameEUTSA_v10017751mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 299aa    MW: 34282.8 Da    PI: 4.9473
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017751mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.87.8e-08175219655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++ r RR+ri ++ +eL +l+P       +Kl+ ae+ + A +Y+k Lq
  Thhalv10017751m 175 SMAARERRRRIAEKTHELAKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 219
                      678899*****************86.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-11167229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.779169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-10172230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-9175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-5175219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.29E-4191222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSSMDCLSHF FNWDPPIQLQ DCFIPDMDTI LPETDSFFFQ SQPQLQFHQP LFQEEAPSQT  60
RLELNHFDAF CDQFLPPQET SLPYPKAEIF DEIHNLDSFL PTPKRQKLIN SSYHCNTNNH  120
CPSPNPNFFN PYDDLDFVPE ASIFPEFLVP DYSLTFKVGR GDQGDNKKPT LSSQSMAARE  180
RRRRIAEKTH ELAKLIPGGQ KLNTAEMFQA AAKYVKFLQS QVGILQMMQA TKKTHSTNVE  240
IETRVLLDSQ AIQEKLSMEE VCLVPCEMVR DLTTEESVWR NPKISRQINK LLSTDLAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017751m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410635.20.0transcription factor bHLH53
SwissprotQ84RD01e-157BH053_ARATH; Transcription factor bHLH53
TrEMBLV4MHR80.0V4MHR8_EUTSA; Uncharacterized protein
STRINGXP_006410635.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-141bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]