PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016259m
Common NameEUTSA_v10016259mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 816aa    MW: 89013 Da    PI: 5.7484
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016259mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016658678323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C+ Cg + ++k++L rH+++H
  Thhalv10016259m 658 CSSCGVRLKQKEELDRHMQLH 678
                      *******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.118656683IPR007087Zinc finger, C2H2
PROSITE patternPS000280658678IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MHSNMRHLFG TWKGVFHPQT LQLIEKELGF NARSDGSAAA VTTGRADPQS QRPPHSIHVN  60
PKYLERQRLQ QSGRTKVMVT DVPEISNLTR DSDRLERVSS ISSGGSWAGP AKVNTIRRPQ  120
RDSLSEPLYE KDVASIAGEY DYASDLPHNS RSVIKKVGSR VTDDGCEKQW YEDMSRGPDL  180
ISDQRDELHT KSRISDYATA RLENSESSGP SRNIGVPYDS WKNSEEEEFM WDLHSRLSET  240
DVATINPKNE LQAPDESERL ESENHLLKRP RFPALDSRFD PATSINSYSC EQKDPNVFGR  300
WTSSPRSLHD SEVFPSIGTT SNAARKGIQP QSRVASSGIL PGTVSDRQSP LHDSTSKQNV  360
TKQDCRRAHS LPQRDPRASR FPAKSQSVPR DDSGRPLSSS TSSSQLKNTN TLQLPDASQV  420
EKFDSKPTAK NARGHTIAPE TTGQPNMADL LEAVMKSGIL SNNSTCGAIK EESSQNEVNP  480
MAPILSAAFK SKTLPPSLPI PVAGDNLLAR LKVEQSSAPL GSCAVSLASV TSAQTSKENS  540
KASDPLSCLL SSLVSQGLIS ASKKELPSLV QCVAPFITQD HSPDHSTNSS TSVSVVPSDA  600
QPLALVKKGQ SSAPKVAPVE TAKLEPENLI GLKFRADKIR ELHPSVISSL FDDLPHLCSS  660
CGVRLKQKEE LDRHMQLHDK KKLKLSGTDS KSRFWFPKAD DWIAGGAGEL EPEDEEVLSE  720
PEDEEVLSEP ESAVEDGPGV AADEDQCACI LCGEIFEEYF GQETGQWMFK GASYLTIPLA  780
NSETNGPIVH AVCLTKNSLQ SLEVGNAIKQ ETCFS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016259m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410825.20.0polyadenylation and cleavage factor homolog 4
TrEMBLV4MI710.0V4MI71_EUTSA; Uncharacterized protein
STRINGXP_006410825.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM642333