PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016023m
Common NameEUTSA_v10016023mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 436aa    MW: 48268.3 Da    PI: 9.1777
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016023mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.7e-053860123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C++C+k F r  nL+ H r H
  Thhalv10016023m 38 FFCEICSKGFQREQNLQLHKRGH 60
                     67******************988 PP

2zf-C2H210.60.0018116137223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      kC +C+k +   s+Lk H + +
  Thhalv10016023m 116 KCDKCSKKYAVISDLKAHSKIC 137
                      8*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.29E-83760No hitNo description
Gene3DG3DSA:3.30.160.605.2E-53760IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121711.8E-53860IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0193860IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7413860IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
SMARTSM0035512080110IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.7E-4103136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.29E-8110135No hitNo description
SMARTSM00355100115135IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
LSPLTHLRER ETTQEIQAHP DAEVVALSPK SLMATNRFFC EICSKGFQRE QNLQLHKRGH  60
NLPWKLKQRT NKEQVKKKVY ICPEKSCVHH DPARALGDLT GIKKHFSRKH GEKKLKCDKC  120
SKKYAVISDL KAHSKICGNR EYRCDCGTLF SRKDSFITHR AFCDSLAEES AKFVSSVPSP  180
LAANSTISIA ATTNNPVLIQ SHLDQSLTRT AGFNVNPNQT TFLGHNFTTS DQIPLQANAF  240
ALPSPQSPRG TSDSVHNLWK LKGDGSQSWL LDEYNNKNIL HERISKNQED EIKKGIIYSG  300
SSPTGPNIAS LFLNNQEGHV SSSSATTLLQ KAAQMGSSSS SNANPMFGLM TSSIFSNDMP  360
NFSCFKPKNK EEELTRDFLG VGSRRGDQQR LHHHHHLSSS VPLTVNHDIL KLATTTVGGE  420
STVDIASDSE NTRFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-30111175367Zinc finger protein JACKDAW
5b3h_F7e-30111175367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016023m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012450.10.0protein indeterminate-domain 13
SwissprotF4JYZ80.0IDD13_ARATH; Protein indeterminate-domain 13
TrEMBLV4LR070.0V4LR07_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006400845.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60470.10.0C2H2 family protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]