PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015799m
Common NameEUTSA_v10015799mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 239aa    MW: 26498.4 Da    PI: 7.0855
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015799mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001784106123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ C+k Fs++  L  H++ H
  Thhalv10015799m  84 FACTFCKKEFSTSQALGGHQNAH 106
                      78******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.59E-681111No hitNo description
Gene3DG3DSA:3.30.160.604.6E-582110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.2E-683108IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.65584111IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MELNLATPTS CSSSSISSSS QEIGFLTGIK GKMKEKIAAE PATETPRLEF RFLFNSDNIR  60
NSGFGSDLDE AEGTKEKEAK ARVFACTFCK KEFSTSQALG GHQNAHKQER SLAKRRKEFE  120
INYPGEYSFY SQYAPSGVSY NSSSSQYDLG VRYNPNIGKS KAYPFNIFRC RLGYRGLNIN  180
SHIPLLSHLS CQKTDDLSKN LISNLEGSIH TNSEQGEEQD LSDSHTCKDS EIDLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015799m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398573.11e-176zinc finger protein 1
TrEMBLV4N3Y51e-174V4N3Y5_EUTSA; Uncharacterized protein
STRINGXP_006398573.11e-175(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87382636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.11e-79C2H2 family protein