PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015728m
Common NameEUTSA_v10015728mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 356aa    MW: 40936.7 Da    PI: 8.4351
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015728mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.26.1e-31581971128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atk...... 79 
                      lp+G++F+Ptdee++ e+L++k+  +       +  +++  ++v di++++P++Lp  v+++ ++ +fF k++++y++g+rk+r +t       
  Thhalv10015728m  58 LPKGVKFEPTDEEVI-EHLEAKCGIDGlkphvfI--QDFiCSSVnDINYTHPKNLP-GVSKDGSSSFFFNKTEQAYPKGQRKRRrITPsgqkde 147
                      799************.99****877764455322..3332556679**********.666778899*****************96655223333 PP

              NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                      + +W++tgk+k+v+  +g + g kk +v+yk   +  k ek +Wvmh+y+l
  Thhalv10015728m 148 TVRWRKTGKTKPVKL-NGVQRGSKKFMVLYKSakKGLKQEKYNWVMHQYHL 197
                      556************.99************64225557789********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-3544215IPR003441NAC domain
PROSITE profilePS5100531.26358215IPR003441NAC domain
PfamPF023652.7E-1359197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MKTLHRAWIV DVPWIASNVK NASASSALQI EDCEAHINCP KCCYHIDNKN VLTPWPGLPK  60
GVKFEPTDEE VIEHLEAKCG IDGLKPHVFI QDFICSSVND INYTHPKNLP GVSKDGSSSF  120
FFNKTEQAYP KGQRKRRRIT PSGQKDETVR WRKTGKTKPV KLNGVQRGSK KFMVLYKSAK  180
KGLKQEKYNW VMHQYHLGTE EEEIGEYVVS KIMYQKQTKF EKTTTSTPPK LPTISVSEDG  240
IAYDDDTEMV LDALVQGLEN IPEASFSSTS EERTQRVEAQ LSFMEKKPNY WDFGIWSENN  300
LVPDLEDADL GTLPDFLTVR SLRKFFYIFR KYPSEFLKLR YNFVDFCSLL RRTVY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133137RKRRR
2134138KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026883e-46CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAL1638173e-46AL163817.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project).
GenBankAL1637923e-46AL163792.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T15N1 (ESSA project).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399961.10.0hypothetical protein EUTSA_v10015728mg
SwissprotQ6NQK24e-66NAC8_ARATH; NAC domain-containing protein 8
TrEMBLV4LCH50.0V4LCH5_EUTSA; Uncharacterized protein
STRINGAT5G14490.11e-152(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50452651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14490.11e-144NAC domain containing protein 85