PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015445m
Common NameEUTSA_v10015445mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 151aa    MW: 16933.7 Da    PI: 8.0659
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015445mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-055274123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C + F ++  L  H++ H
  Thhalv10015445m 52 FSCNYCQRKFYSSQALGGHQNAH 74
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.78E-64979No hitNo description
PROSITE profilePS5015711.0945279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MDYQPNTSLR LSLPSYKNHQ LNLELVLEPS SMSSSSSSST NSSSCLEQPR VFSCNYCQRK  60
FYSSQALGGH QNAHKLERTL AKKSRELFRS STTVDSDQPY PFSGRFELYG RGYEGFVDSG  120
GSRNFSGRRV PESSLDQDQE MSHLDLSLRL *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015445m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114820.0AB011482.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2.
GenBankATHZFPB0.0L39645.1 Arabidopsis thaliana zinc finger protein 2 (ZFP2) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401197.21e-105zinc finger protein 2
SwissprotQ392612e-90ZFP2_ARATH; Zinc finger protein 2
TrEMBLV4KXC11e-104V4KXC1_EUTSA; Uncharacterized protein
STRINGXP_006401197.11e-105(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66212844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.12e-90zinc finger protein 2