PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015305m
Common NameEUTSA_v10015305mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 183aa    MW: 20140.2 Da    PI: 6.7812
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015305mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-052042123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     +kC++C++s++    L  H++ H
  Thhalv10015305m 20 FKCKYCPRSYPKTQALSGHQNAH 42
                     89******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.26E-61747No hitNo description
PROSITE profilePS5015711.3442047IPR007087Zinc finger, C2H2
PROSITE patternPS0002802242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSSWDSRSAS DVSDDGSATF KCKYCPRSYP KTQALSGHQN AHRREREITE RQQRAILAHV  60
NQPDPNPYPN PYVFPIHNAL TPGFEQPLCN VNKPDSLAVG YNQRTRSSSS DHARLQIHTS  120
QGLDRGWTIT ENPYQPLLSA PSPVSLDLCL GVGSSSQAQT RPKEPNDALA ANQEDDDLSL  180
KL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015305m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398971.11e-134uncharacterized protein LOC18018075
TrEMBLV4L9R91e-132V4L9R9_EUTSA; Uncharacterized protein
STRINGXP_006398971.11e-133(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157411316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.11e-36C2H2 family protein