PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014857m
Common NameEUTSA_v10014851mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bZIP
Protein Properties Length: 168aa    MW: 18366.2 Da    PI: 10.194
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014857mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.51.1e-1686146161
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                      eke kr +r+ +NR++A+  R+RKka++ eLe++vk Le++N++L ++l++l++e + l+ 
  Thhalv10014857m  86 EKETKRLKRLLRNRVSAQQARERKKAYLSELENRVKDLENKNSELEERLSTLQNENQMLRH 146
                      899*****************************************************98865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000418.9E-785101IPR001630cAMP response element binding (CREB) protein
PfamPF001707.4E-1586147IPR004827Basic-leucine zipper domain
SMARTSM003382.2E-1586150IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.87588151IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.1E-1790150No hitNo description
SuperFamilySSF579595.38E-1490148No hitNo description
CDDcd147041.70E-1691142No hitNo description
PROSITE patternPS00036093108IPR004827Basic-leucine zipper domain
PRINTSPR000418.9E-7103123IPR001630cAMP response element binding (CREB) protein
PRINTSPR000418.9E-7123140IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MQEQATSSLA ASSLPSSSER SSSSAPHLDI KEGIESDEEI RRVPEFGGEA AGKETSGRES  60
GSATGLERTQ TTVGESQRKR GRSPAEKETK RLKRLLRNRV SAQQARERKK AYLSELENRV  120
KDLENKNSEL EERLSTLQNE NQMLRHILKN TTGNKRGGGA SNADASL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A2e-20111150342Transcription factor HY5
2oqq_B2e-20111150342Transcription factor HY5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0255190.0BT025519.1 Arabidopsis thaliana At5g11260 mRNA, complete cds.
GenBankAB0054560.0AB005456.1 Arabidopsis thaliana mRNA for HY5, complete cds.
GenBankAB0052950.0AB005295.1 Arabidopsis thaliana mRNA for HY5, complete cds.
GenBankAK2293620.0AK229362.1 Arabidopsis thaliana mRNA for bZip transcription factor HY5 / AtbZip56, complete cds, clone: RAFL16-60-N08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399627.11e-114hypothetical protein EUTSA_v10014851mg
SwissprotO246466e-92HY5_ARATH; Transcription factor HY5
TrEMBLV4KT211e-114V4KT21_EUTSA; Uncharacterized protein
STRINGscaffold_601144.15e-95(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.13e-89bZIP family protein