PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014467m
Common NameEUTSA_v10014467mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TCP
Protein Properties Length: 255aa    MW: 28541.8 Da    PI: 8.6735
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014467mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.21.5e-3041129389
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa............seceaesssssasn 84 
                      g+kdrhsk++T +g+RdRR+Rlsa +a++++dLqd+LG+ ++sk i+WLl++ak+ ++ l+ ++++++                          
  Thhalv10014467m  41 GGKDRHSKVCTVRGLRDRRIRLSAMTAIQVYDLQDRLGLSQPSKVIDWLLEAAKHDVDLLPPLQFIPSlsagagksfpgiF------------- 121
                      79*************************************************************888883333333222221............. PP

              TCP  85 sssg......k 89 
                         +      +
  Thhalv10014467m 122 ---EsfdlgsS 129
                      ...02222221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-2742125IPR005333Transcription factor, TCP
PROSITE profilePS5136929.49542100IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSLTSREDMG IKQEDNDHTQ ATSLSWLRQN PRIVRVSRKF GGKDRHSKVC TVRGLRDRRI  60
RLSAMTAIQV YDLQDRLGLS QPSKVIDWLL EAAKHDVDLL PPLQFIPSLS AGAGKSFPGI  120
FESFDLGSSS LRTDTTQRES LDLERSKLVK FDESSNLDHR FFSNSRQSNK LCFPTLSAYN  180
SSSSSYHYNN LGHIQQYSLL DQSGNVTVTL SNNNDLNPQG METMSSIIPR YPSFLGGDQL  240
QLFSSNSNSS KQID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1647101155Putative transcription factor PCF6
5zkt_B4e-1647101155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00497DAPTransfer from AT5G08070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014467m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2410047e-90AC241004.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026J02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399294.10.0transcription factor TCP17
RefseqXP_024012319.10.0transcription factor TCP17
SwissprotQ9LEZ97e-95TCP17_ARATH; Transcription factor TCP17
TrEMBLV4LEA60.0V4LEA6_EUTSA; Uncharacterized protein
STRINGXP_006399294.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08070.18e-88TCP domain protein 17
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]