PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011534m
Common NameEUTSA_v10011534mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TCP
Protein Properties Length: 408aa    MW: 44584.9 Da    PI: 7.0453
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011534mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.16.4e-34541682104
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................ssssa 70 
                      +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+ +ak +i++l+++                         s    
  Thhalv10011534m  54 TGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLIMKAKSSIDDLAKLppwnpadtirqaaanakprrpktliS---- 143
                      79**************************************************************76666665555444444444444331.... PP

              TCP  71 seceaesssssasnsssg.........kaaksaakskksqksa 104
                                       +         +  ++ +++++ ++++
  Thhalv10011534m 144 -----------------PppetgirggS-VSTREETEHHRHHD 168
                      .................03333333321.11111111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.7E-3154164IPR005333Transcription factor, TCP
PROSITE profilePS5136933.60656114IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGNEEPNHHH LVDSQSPPLL AMTHQSLFSA VAATENGGCG EIVEVQGGHI VRSTGRKDRH  60
SKVCTAKGPR DRRVRLSAPT AIQFYDVQDR LGFDRPSKAV DWLIMKAKSS IDDLAKLPPW  120
NPADTIRQAA ANAKPRRPKT LISPPPETGI RGGSVSTREE TEHHRHHDSS FLPASMDSDS  180
IADTIKSFFP VVSTESPPPQ NYHHQPPSEF PSRATNNTQN QDLRLSLQSF QNGPPFANQT  240
EHVEFSGQSN PLGFDSSTAS WVQSQQNHNQ SPEFGRVVTW NNGGAADSAA IGGGRGGFVF  300
ASPATTTSFP FQPDYGQSQV FSQRGPLQSI NTPMIRAWFD PHHHHQYTNT DHHPYQIPPA  360
IHQSAIPGIA LGSSGEFSGF CIPARFQGEQ EEHRDNKPSS ASSDSRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1961114154Putative transcription factor PCF6
5zkt_B4e-1961114154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00203DAPTransfer from AT1G53230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011534m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0080072e-82AC008007.7 Genomic sequence for Arabidopsis thaliana BAC F12M16 from chromosome I, complete sequence.
GenBankAY0996782e-82AY099678.1 Arabidopsis thaliana putative flower development protein cycloidea (At1g53230) mRNA, complete cds.
GenBankBT0002662e-82BT000266.1 Arabidopsis thaliana putative flower development protein cycloidea (At1g53230) mRNA, complete cds.
GenBankCP0026842e-82CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392814.10.0transcription factor TCP3
RefseqXP_006392815.10.0transcription factor TCP3
SwissprotQ9MAH81e-170TCP3_ARATH; Transcription factor TCP3
TrEMBLV4JXC20.0V4JXC2_EUTSA; Uncharacterized protein
STRINGXP_006392814.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24082771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.11e-163TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
Publications ? help Back to Top
  1. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]