PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009894m
Common NameEUTSA_v10009894mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 287aa    MW: 32294.4 Da    PI: 9.0846
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009894mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006172194123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C k+F++   L  H  +H
  Thhalv10009894m 172 FECETCEKVFKSYQALGGHRASH 194
                      89***********9999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.556431IPR007087Zinc finger, C2H2
SMARTSM003554.2426IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.9E-8526No hitNo description
PfamPF139124.7E-5627IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576676.9E-8167194No hitNo description
PfamPF139125.5E-11172196IPR007087Zinc finger, C2H2
SMARTSM003550.087172194IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.824172199IPR007087Zinc finger, C2H2
PROSITE patternPS000280174194IPR007087Zinc finger, C2H2
PfamPF139125.0E-9231253IPR007087Zinc finger, C2H2
SMARTSM003550.32231253IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280233253IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEEKYCKLCW KRFVNGRALG GHMRSHMLHH PLPSQVDPHP ESASSLMADP GFALQDRESE  60
TESSKKPTRK RSRLTRRRSI YVSLRHQEPE EEGNSETAEE IKTMKVGPRT SQQLLSESCT  120
EQEPKSSVSD AARTAEEDLA FSLVLLSRDK WGKEKEEESD DRIRWEKKRK WFECETCEKV  180
FKSYQALGGH RASHKKKRAL EGSSYSSSSS SVILLVSDEK KKKKKKRSSG HECPICLKVC  240
SSGQALGGHK RSHATGSENN SLVKRGIINL IDLNLPAPSE DEDLVS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220226KKKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009894m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934211e-69AB493421.1 Arabidopsis thaliana At1g02030 mRNA for hypothetical protein, partial cds, clone: RAAt1g02030.
GenBankCP0026841e-69CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankU899591e-69U89959.1 Arabidopsis thaliana BAC T7I23, complete sequence.
GenBankX986691e-69X98669.1 A.thaliana zat1 gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418480.10.0zinc finger protein ZAT1
SwissprotQ390921e-103ZAT1_ARATH; Zinc finger protein ZAT1
TrEMBLV4LAN60.0V4LAN6_EUTSA; Uncharacterized protein
STRINGXP_006418480.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.13e-91C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]