PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009489m
Common NameEUTSA_v10009489mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 317aa    MW: 35807.3 Da    PI: 6.3193
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009489mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-05108127120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C+ C+k+F+r  n++ H+
  Thhalv10009489m 108 FSCSVCNKTFNRFNNMQMHM 127
                      89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.85E-5102130No hitNo description
PROSITE profilePS5015710.263108135IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-5108127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-4179214IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MYNSNLYCIS GDEDSVVLSL GLPGQQYPNH HKPTNTKPAS SNHPIDHHEF DNLPLTNPND  60
VTVALHIGPP VSDKETTTGG SNQEGLTARQ GQYWIPSLSQ ILVGPTQFSC SVCNKTFNRF  120
NNMQMHMWGH GSQYRKGPES LRGTKSSSSI LRLPCYCCAE GCKNNIDHPR SKPLKDFRTL  180
QTHYKRKHGA KPFRCRKKCE KMFAVRGDWR THEKNCGKLW FCVCGSDFKH KRSLKDHVRA  240
FGDGHAAHTV GDRVLAIGDG DEDDDDDDDD DDDMEEEEAE DERDDDGEEE DGNGENGRGD  300
KNYGIRYDHF RRYGHF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009489m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118090.0AJ311809.1 Arabidopsis thaliana mRNA for WIP6 protein (At1g13290 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417136.10.0zinc finger protein WIP6
SwissprotQ9FX681e-179ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLV4KVY00.0V4KVY0_EUTSA; Uncharacterized protein
STRINGXP_006417136.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-175C2H2-like zinc finger protein