PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008559m
Common NameEUTSA_v10008559mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 254aa    MW: 28532.3 Da    PI: 6.2975
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008559mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.001780102123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k+F ++  L  H  +H
  Thhalv10008559m  80 FQCKACKKVFASHQALGGHRASH 102
                      89**************9999888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.34E-779102No hitNo description
PfamPF139122.3E-979104IPR007087Zinc finger, C2H2
SMARTSM003550.09880102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.01480107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene3DG3DSA:1.10.601.100.001112146No hitNo description
SuperFamilySSF576677.34E-7149176No hitNo description
PfamPF139129.1E-13153177IPR007087Zinc finger, C2H2
SMARTSM003550.51154176IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307154176IPR007087Zinc finger, C2H2
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MNLPCIDFVM FGQHDEDNMS RRPWKRERSN HHLNLSPSED EELANCLVLL SNSGDAYDGH  60
NKHRHGKGKT VKKQKTAQVF QCKACKKVFA SHQALGGHRA SHKKVKGCFA SQDKEEEEEE  120
EYKEDDDEEE EDDDEEEEED KSTAHVARKR SNAHECTICH RVFSSGQALG GHKRCHWLTP  180
SNYLRMTPLN DSAGRSHQPL DQRPSLDLNL ACQDYSVDPT VMSVGMIGRD ARGGTSHNAT  240
SSSWLKLASG DWS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008559m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0300400.0BT030040.1 Arabidopsis thaliana At1g02040 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankU899590.0U89959.1 Arabidopsis thaliana BAC T7I23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418481.20.0LOW QUALITY PROTEIN: zinc finger protein AZF3
TrEMBLV4KZN00.0V4KZN0_EUTSA; Uncharacterized protein
STRINGXP_006418481.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138951318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.16e-25C2H2-like zinc finger protein