PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008175m
Common NameEUTSA_v10008175mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TCP
Protein Properties Length: 330aa    MW: 36277.4 Da    PI: 7.1977
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008175mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP63.11.1e-19511563135
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 
                      g+kdrhsk+ T++          +++a++f+dLqd+LGfd++sk++eWL+++a  +i +l++ +++                    +a + +++
  Thhalv10008175m  51 GGKDRHSKVLTSK----------VTTAIQFYDLQDRLGFDQPSKAVEWLINAASDSISDLPSINTNFD------------------QALSLSKS 116
                      6788888888876..........89************************************9955555..................22222233 PP

              TCP  97 skksqksaasalnlak.esrakarararertrekmriknk 135
                        +s +s++s l+l++ e r kar+rarert++++ ++ +
  Thhalv10008175m 117 ACSSGTSESSLLSLSRtEIRGKARERARERTAKEKDKDLQ 156
                      445556666779999999***********99998877654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-1951149IPR005333Transcription factor, TCP
PROSITE profilePS5136915.51152100IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.766133151IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEVDDDIDAQ QKQQQQPQSR KQQRISDEDI TGMRNWNNPS SRIIRVSRAS GGKDRHSKVL  60
TSKVTTAIQF YDLQDRLGFD QPSKAVEWLI NAASDSISDL PSINTNFDQA LSLSKSACSS  120
GTSESSLLSL SRTEIRGKAR ERARERTAKE KDKDLQNAQS SFTQLLTGGF DEPNRNWTGG  180
GGSDCFNNPV QLIPNSSSSS LPHFNNNHHR QETSMNQFSF VPDYNFGISS SDSPGAAAIN  240
GGCYSSRGTL QSNSQSLSFL NNNNINQRSI SSSSSSSSPM DSQSISFFMA TPPPLDHHSH  300
QLPAAFDGRL YLYYGEGNRS SEDKGKDRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1245101255Putative transcription factor PCF6
5zkt_B1e-1245101255Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00169DAPTransfer from AT1G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008175m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531560.0AK353156.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-I20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008427.10.0transcription factor TCP24
RefseqXP_024008428.10.0transcription factor TCP24
SwissprotQ9C7581e-145TCP24_ARATH; Transcription factor TCP24
TrEMBLV4KRB80.0V4KRB8_EUTSA; Uncharacterized protein
STRINGXP_006415501.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138401726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-104TCP family protein
Publications ? help Back to Top
  1. Wang H,Mao Y,Yang J,He Y
    TCP24 modulates secondary cell wall thickening and anther endothecium development.
    Front Plant Sci, 2015. 6: p. 436
    [PMID:26157444]
  2. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]