PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008140m
Common NameEUTSA_v10008140mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 337aa    MW: 36107.7 Da    PI: 9.8122
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008140mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.62.8e-3872130361
           zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      e alkcprCds ntkfCyynny+l+qPr+fCk+CrryWt+GGalrnvPvGgg+r+n k+
  Thhalv10008140m  72 EGALKCPRCDSINTKFCYYNNYNLTQPRHFCKGCRRYWTRGGALRNVPVGGGCRRNSKK 130
                      5689***************************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3257127IPR003851Zinc finger, Dof-type
PfamPF027013.2E-3274129IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.41375129IPR003851Zinc finger, Dof-type
PROSITE patternPS01361077113IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0009625Biological Processresponse to insect
GO:0009753Biological Processresponse to jasmonic acid
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MPTNSNHQIH HQLHENGSIV NGDGLFSHQL IPPNPQNPNP NHHHAAVSGG HPARLGGSMA  60
ERARQAKAPP PEGALKCPRC DSINTKFCYY NNYNLTQPRH FCKGCRRYWT RGGALRNVPV  120
GGGCRRNSKK GKNGNSKSSS SSSKQSSQTV NTPSSSSGQL RTNHQFPFLP TLHNLTQLGG  180
IGLNLAATNG NNQAPHQIGS SLMNDLGFLH VGNGRNTSAP ITGNIHDSNN NNNENNLMAS  240
AGSLSPFALF DPTTGLYAFP NEGNIGNNVG VSFSSTSMVD SRAYQTAPVK MEEQPNLVNL  300
SRPVSGLTSP GNQTNQYFWN NSDFSGPSSN DHHQLL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). Involved in the regulation of root development (PubMed:23057675). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Element of a regulatory network controlling indole glucosinolates (IGS) biosynthesis, probably by inducing the expression of accurate genes (e.g. CYP83B1). Promotes apical dominance (PubMed:16740150). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:16740150, ECO:0000269|PubMed:23057675, ECO:0000269|PubMed:30626969}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008140m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA) (PubMed:10758484). Induced transiently in response to the generalist herbivore S.littoralis. Triggered by methyl jasmonate (MeJA) and wounding (PubMed:16740150). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:16740150}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417783.10.0dof zinc finger protein DOF1.1 isoform X2
SwissprotQ8L9V61e-172DOF11_ARATH; Dof zinc finger protein DOF1.1
TrEMBLV4MVE90.0V4MVE9_EUTSA; Uncharacterized protein
STRINGXP_006417783.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53361749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07640.21e-152Dof family protein
Publications ? help Back to Top
  1. Miyashima S, et al.
    Mobile PEAR transcription factors integrate positional cues to prime cambial growth.
    Nature, 2019. 565(7740): p. 490-494
    [PMID:30626969]