PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006201m
Common NameEUTSA_v10006201mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 249aa    MW: 27571.3 Da    PI: 8.4957
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006201mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-06220242223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +Cp+C++ F+++ +L +Hi + H
  Thhalv10006201m 220 VCPKCSRGFRDPVDLLKHIDRdH 242
                      7******************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183103.27E-12455No hitNo description
Gene3DG3DSA:4.10.1110.102.4E-101049IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.8611059IPR000058Zinc finger, AN1-type
PfamPF014281.5E-131349IPR000058Zinc finger, AN1-type
SMARTSM001543.8E-51352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.107.2E-1091148IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.16E-993146No hitNo description
PROSITE profilePS510398.28298151IPR000058Zinc finger, AN1-type
PfamPF014282.6E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.0021101142IPR000058Zinc finger, AN1-type
PROSITE profilePS501578.891219247IPR007087Zinc finger, C2H2
PROSITE patternPS000280221242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDYCKQ IDFLPFTCDR CIQVFCLEHR SYMKHNCPKG NRGDLTVVIC  60
PLCAKGVRLN PDEDPNITWE KHVNTDCDPS NYEKVVKKKK CPVPRCRESL TFSNTIKCRD  120
CGVDHCLKHR FGPDHSCSGP KKPESSFSFI GGFLSTNTKE APATSSSRWS SLLASAEASI  180
SKLGNDISQK LQFGSGSDGN LEKRQERNGK QSSGKVTVDV CPKCSRGFRD PVDLLKHIDR  240
DHRGTSKA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006201m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1190960.0AK119096.1 Arabidopsis thaliana At3g57480 mRNA for unknown protein, complete cds, clone: RAFL21-44-N05.
GenBankBT0062230.0BT006223.1 Arabidopsis thaliana At3g57480 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402873.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
SwissprotQ9SCM41e-162SAP13_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
TrEMBLV4NE370.0V4NE37_EUTSA; Uncharacterized protein
STRINGXP_006402873.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57480.11e-139C2H2 family protein
Publications ? help Back to Top
  1. Dixit A, et al.
    A stress-associated protein, AtSAP13, from Arabidopsis thaliana provides tolerance to multiple abiotic stresses.
    Plant Cell Environ., 2018. 41(5): p. 1171-1185
    [PMID:29194659]