PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005521m
Common NameEUTSA_v10005521mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 283aa    MW: 31167.9 Da    PI: 4.8623
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005521mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.9e-0584106123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+k Fs++  L  H++ H
  Thhalv10005521m  84 YTCQFCSKGFSTSQALGGHQNAH 106
                      9*******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-781112No hitNo description
Gene3DG3DSA:3.30.160.607.8E-682110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.09284111IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MASPVMSSSS SSTTQTEKLQ GLILAMEEES REKATESTNL RLGSPAEQEV MSERTSENPS  60
VRSGAVRTGK EIMTLYPSKS NKIYTCQFCS KGFSTSQALG GHQNAHKQER QWDKKRKEME  120
ETYPELAFLP PYLDKPHLLL GGYSQDALSN ENHLGITLEP LMKRSVCSSF PRGLGDMNMT  180
VVPRITPTRF FNGTTFTNGS SSSRGFELSP SNISNLPMIP MNVPPFHPPL TTNPSEENVL  240
VEENFISKIG KAKIEEIDDD DDDNQPKEGN AEGWGIDLSL SL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005521m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394933.20.0uncharacterized protein LOC18012975
TrEMBLV4KLW20.0V4KLW2_EUTSA; Uncharacterized protein
STRINGXP_006394933.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.16e-95C2H2 family protein