PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005323m
Common NameEUTSA_v10005323mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 287aa    MW: 31747.8 Da    PI: 8.4195
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005323mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00121132223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     +C+ C+ sF++   L  H+r+H
  Thhalv10005323m 11 TCQVCKISFPNGRALGGHMRSH 32
                     6********************9 PP

2zf-C2H212.50.00043256278123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ykC +C+++F +   L  H ++H
  Thhalv10005323m 256 YKCDICDRVFESGQALGGHKKVH 278
                      9***********99999999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.5591037IPR007087Zinc finger, C2H2
SMARTSM003550.471032IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
PfamPF139122.7E-61233IPR007087Zinc finger, C2H2
SuperFamilySSF576671.08E-7205278No hitNo description
PROSITE profilePS5015710.637207234IPR007087Zinc finger, C2H2
PfamPF139124.4E-11207230IPR007087Zinc finger, C2H2
SMARTSM003550.19207229IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280209229IPR007087Zinc finger, C2H2
PfamPF139122.5E-11255278IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.367256278IPR007087Zinc finger, C2H2
SMARTSM003550.016256278IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280258278IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MMYSLLKETK TCQVCKISFP NGRALGGHMR SHTQKLSASN AESATGSTIP SQQTSNKLGA  60
KFRRPLETVL MRSVHTSTEV GACPKPDLKT EEGGQRQITG KRKVVVDLED SSESDSCLTD  120
EEGALCLVAM SEGKRPENCQ KPKAIDRRLV STQKGKEKYE HVANLLTSNV GTIAEDHDDD  180
DDDDGGDVDD GDETYKVETE KKCKKKYKCD TCGKVLRSYQ ALGGHRTSHR NKRLKLCEKN  240
DQAVKPENGL VVRRHYKCDI CDRVFESGQA LGGHKKVHYL FLKPSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005323m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394501.20.0zinc finger protein ZAT1
TrEMBLV4KPA20.0V4KPA2_EUTSA; Uncharacterized protein
STRINGXP_006394501.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141711523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.14e-31C2H2-like zinc finger protein