PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005103m
Common NameEUTSA_v10005103mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GATA
Protein Properties Length: 140aa    MW: 15314.6 Da    PI: 10.5461
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005103mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.96.8e-193669134
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                     C+ Cgt+kTplWR gp g+k+LCnaCG+++rkk+
  Thhalv10005103m 36 CADCGTSKTPLWRGGPAGPKSLCNACGIRNRKKR 69
                     ********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.18E-132978No hitNo description
PROSITE profilePS5011412.6113066IPR000679Zinc finger, GATA-type
SMARTSM004014.4E-143081IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-153469IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.03E-133581No hitNo description
PfamPF003205.2E-173670IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403661IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MLNHSEKVLV DSEAMERRAG DMIEQNKTSS NDKKTCADCG TSKTPLWRGG PAGPKSLCNA  60
CGIRNRKKRR GVDDKKPKKS NSGGGDLRRN PKFGESLKQR MIDLGMAKKS TVEKQRRKLG  120
EEEQAAVLLM ALSYGSVYA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005103m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325782e-42AC232578.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS013H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395075.11e-98GATA transcription factor 16
SwissprotQ9FJ103e-72GAT16_ARATH; GATA transcription factor 16
TrEMBLV4MLN43e-97V4MLN4_EUTSA; Uncharacterized protein
STRINGXP_006395075.16e-98(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-74GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]