PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004893m
Common NameEUTSA_v10004893mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 220aa    MW: 25646.3 Da    PI: 9.6372
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004893mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.43.4e-171150342
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     ien+s r+ t+ kR+ gilKKA+EL +LCd+ +av+i s+
  Thhalv10004893m 11 IENESSRKSTYKKRKSGILKKAYELATLCDVPIAVMIDSP 50
                     9**********************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.3E-25160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.273147IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-24295IPR002100Transcription factor, MADS-box
CDDcd002666.80E-26285No hitNo description
PRINTSPR004044.4E-12323IPR002100Transcription factor, MADS-box
PfamPF003199.6E-171150IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-123859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MTRQKVKMVY IENESSRKST YKKRKSGILK KAYELATLCD VPIAVMIDSP YDLSPEMWPS  60
REAVEHVVSE WNKLSVMEKT KKMVNQETFL QQRIFKSNES WKKMWKENKE LEMKEVMFDC  120
LSGKTSVTRT KKSDLRDFNC VIEQYLKDLN RRVEILKNHD SSSSSAADVA TTTTHDINMP  180
RFETGSSSAG FYDRIRDQIE NSLNVKHNVK DLDLNKKQW*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004893m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394900.11e-162agamous-like MADS-box protein AGL80
SwissprotQ9FJK35e-51AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLV4ML821e-161V4ML82_EUTSA; Uncharacterized protein
STRINGXP_006394900.11e-162(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.13e-87M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]