PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004796m
Common NameEUTSA_v10004796mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TCP
Protein Properties Length: 257aa    MW: 27303.5 Da    PI: 10.1512
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004796mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.54.7e-38332173118
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 
                      +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++a+ s   +s+ +s+        
  Thhalv10004796m  33 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASVSIRGNSTTNSTsstctlss 126
                      79*************************************************************9999988833333333332222235666666 PP

              TCP  89 ............................................................kaaksaa.kskksqksaasalnlakesraka 118
                                                                                   a ++   +++++q+++ +al ++++++++a
  Thhalv10004796m 127 slldhkpllgsspfilgkrvradedtgggkdetmgsfatpagfwavparpdfgqvwsfatGAPQEMFlQQHQQQQQPGAALFVHQQQQQQA 217
                      7777777777777777777777777777777777777777777777777777777777763333333344444444554555555444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.2E-3438195IPR005333Transcription factor, TCP
PROSITE profilePS5136927.8923892IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSNNTEGVMI SNGAAIQRQQ QQQQQSSDGA LVVKKPPAKD RHSKVDGRGR RIRMPIICAA  60
RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTTPA SFSTASVSIR GNSTTNSTSS  120
TCTLSSSLLD HKPLLGSSPF ILGKRVRADE DTGGGKDETM GSFATPAGFW AVPARPDFGQ  180
VWSFATGAPQ EMFLQQHQQQ QQPGAALFVH QQQQQQAAMG EASAARVGNY LPGHLNLLAS  240
LSGGPPGSGR REDDPR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004796m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893321e-66AC189332.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB038E05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024007014.10.0transcription factor TCP7
RefseqXP_024007015.10.0transcription factor TCP7
RefseqXP_024007016.10.0transcription factor TCP7
RefseqXP_024007017.10.0transcription factor TCP7
SwissprotQ9FMX21e-119TCP7_ARATH; Transcription factor TCP7
TrEMBLV4KPJ10.0V4KPJ1_EUTSA; Uncharacterized protein
STRINGXP_006394596.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-77TCP family protein