PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004635m
Common NameEUTSA_v10004635mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bZIP
Protein Properties Length: 315aa    MW: 35243.2 Da    PI: 4.5245
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004635mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.22.3e-10158202448
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                       k+ rr+ +NR AA rsR+RKk+++  Le+k+k Le e ++L   
  Thhalv10004635m 158 AKKRRRRVRNRDAAVRSRERKKEYVTDLEKKSKYLERECMRLGRM 202
                      799***********************************9998655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-4153219IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.5E-12153217No hitNo description
PROSITE profilePS5021710.726157214IPR004827Basic-leucine zipper domain
PfamPF077161.7E-9159202IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.75E-11159215No hitNo description
PROSITE patternPS000360162177IPR004827Basic-leucine zipper domain
CDDcd147041.62E-13169211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAEEFGCFDI LLDDDLFFDF DPSIVTEPPI ADDFIRSSPD SANSWIGEIE SQLMNDEQEN  60
FLELDQQSVS EFLADIFVDY PTSESSPVEF STAKVSDDVP TVESPAAGKE SAGSDDSVKE  120
KADFSIEKKS DASNDSGSEN QDEAKVESEI DGNDDAMAKK RRRRVRNRDA AVRSRERKKE  180
YVTDLEKKSK YLERECMRLG RMLECFVAEN HSLRLCLQKG SGNASMMTKQ ESAVLLLESL  240
LLGSLLWYLG DIICQFPHQP QTKSCFQSVE AGEPEKLVRS GRESSKISNN NTGKSRRCKG  300
SRPRMKHQVF TLVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163KKRRRR
2159164KRRRRV
3159178KRRRRVRNRDAAVRSRERKK
4161178RRRVRNRDAAVRSRERKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1338051e-88AY133805.1 Arabidopsis thaliana clone U10320 putative bZIP transcription factor (At1g42990) mRNA, complete cds.
GenBankAY0459641e-88AY045964.1 Arabidopsis thaliana putative bZIP transcription factor (At1g42990) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395999.10.0hypothetical protein EUTSA_v10004635mg
SwissprotQ9C7S05e-89BZP60_ARATH; bZIP transcription factor 60
TrEMBLV4K6S20.0V4K6S2_EUTSA; Uncharacterized protein
STRINGfgenesh2_kg.1__3703__AT1G42990.17e-87(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46342848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.19e-88basic region/leucine zipper motif 60