PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004440m
Common NameEUTSA_v10004440mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TCP
Protein Properties Length: 368aa    MW: 41100.6 Da    PI: 6.9072
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004440mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.88.3e-3064177366
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................... 65 
                      g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak  +++l+ +                               
  Thhalv10004440m  64 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKDDVDKLPPLqfphgfnqmypnlifgnsgigesssstafpg 157
                      78*************************************************************6666666555555555555554444444444 PP

              TCP  66 ...................s 66 
                                         +
  Thhalv10004440m 158 tnlgfldswdlggsssrtrP 177
                      44444444444433333220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-2765201IPR005333Transcription factor, TCP
PROSITE profilePS5136929.78965123IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MRSRECDEED IQAKQEEDNH QVNLNNMLQQ QHQQQNQPSS VSSSRQWTSA FRNPRIVRVS  60
RTFGGKDRHS KVCTVRGLRD RRIRLSVPTA IQLYDLQDRL GLSQPSKVID WLLEAAKDDV  120
DKLPPLQFPH GFNQMYPNLI FGNSGIGESS SSTAFPGTNL GFLDSWDLGG SSSRTRPRIA  180
DTTTTQRESF DLDKGKWIKH DDHNSNQDHG FDTNHQHFSL TNPYNNNNNN NTSSYYNLGH  240
LQHSLDQSGN NVTVAISNVH NNNNLNLPPP SSSAGDGSQL FFGPTPPAMS SLFPTYPSFL  300
GASHHHHHHH HHVVDGAGNL QLFSSNANTA SQQQMMTGNS SLIRPFHHLM SSNHDTDRHS  360
SDNDSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1970124155Putative transcription factor PCF6
5zkt_B3e-1970124155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004440m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394548.10.0transcription factor TCP5
SwissprotQ9FME30.0TCP5_ARATH; Transcription factor TCP5
TrEMBLV4KKT30.0V4KKT3_EUTSA; Uncharacterized protein
STRINGXP_006394548.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-174TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]