PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004252m
Common NameEUTSA_v10004022mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 435aa    MW: 47273.5 Da    PI: 9.1292
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004252mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-05628123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C  C+k F r  nL+ H r H
  Thhalv10004252m  6 FVCDVCNKGFQREQNLQLHRRGH 28
                     89*******************88 PP

2zf-C2H2130.0003182104123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H +t+
  Thhalv10004252m  82 WKCDKCSKRYAVQSDWKAHSKTC 104
                      58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.7E-8528No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.032628IPR007087Zinc finger, C2H2
PfamPF139127.2E-5628IPR007087Zinc finger, C2H2
SMARTSM003550.0047628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551104777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.7E-877102No hitNo description
SMARTSM0035514082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MATNRFVCDV CNKGFQREQN LQLHRRGHNL PWKLKQKSTK EVKRKVYLCP EPTCVHHDPS  60
RALGDLTGIK KHYYRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTKEYR CDCGTIFSRR  120
DSYITHRAFC DALIQETARN PTVSFTSMTA ASSGSGSGGL YGRLGGSSAL SHHHPNSGFT  180
PLTGYNLNIA SPENSRDFVP QSSNPNFLIQ CSSSQGMLTA PHNNDQSFIN QHGLIQFDPV  240
DNINLKSSNT NNSFFNLGFF QENTKNSETS LPSLYSTDVL VRHREENMNA GSNVSATALL  300
QKATQMGSMT SNDPSALFRG LASSSNSSSV VVNDFGGGHI MGNDNNGNLQ GLMNSLAAVN  360
GGGVGGSGGN IFDVHFGDNG NMSGSDKLTL DFLGVGGMLR NVNRGGSVRG RGRDDVSLDG  420
EVKFPEQNHP FGRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-3478144369Zinc finger protein JACKDAW
5b3h_F7e-3478144369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004252m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3864030.0FJ386403.1 Thellungiella halophila putative inositol phosphatase gene, partial cds; cyclin-like protein, putative microtubule-associated protein, putative C2H2 zinc finger protein, brassinosteroid receptor-like protein, putative transmembrane transporter, salt overly sensitive 1-like protein, valyl-tRNA synthetase-like protein, putative glutamate decarboxylase, putative peptide transporter, putative F-box protein, putative nitrate transporter, putative NADH dehydrogenase, putative Myb DNA binding proteins, putative C2H2 zinc finger proteins, putative F-box protein, SWI/SNF helicase-like protein, defensin-like proteins, and putative PPR repeat protein genes, complete cds; and unknown genes.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395812.10.0protein indeterminate-domain 4, chloroplastic isoform X1
SwissprotQ8GYC10.0IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLV4L0630.0V4L063_EUTSA; Uncharacterized protein
STRINGXP_006395812.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.20.0indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]