PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004151m
Common NameEUTSA_v10004151mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 468aa    MW: 51456.6 Da    PI: 5.707
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004151mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022127149123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+Cg +F++ ++  +H  ++
  Thhalv10004151m 127 FECPICGNHFKSEEEVSVHVESC 149
                      89*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1435036.02E-18183251IPR018997PUB domain
CDDcd092122.36E-20186269No hitNo description
PfamPF094098.1E-18186259IPR018997PUB domain
SMARTSM005802.4E-22187254IPR018997PUB domain
SuperFamilySSF542362.84E-12333442IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.907.3E-8358441No hitNo description
PROSITE profilePS5003310.446358442IPR001012UBX domain
PfamPF007891.4E-4359437IPR001012UBX domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDDVKDKLKG FMKKVNLSSS SGKFKGSGRV LGSSSSSGPV NPIQNRFNPP QAPNPNPTPR  60
PTKPSPSPPP PIGSSLAPLP EKPISSGSTT NPDPNPVRPP PQDGFDPYGA LITSSNRSQN  120
GYSLNVFECP ICGNHFKSEE EVSVHVESCL GNTNGDESAS EKIGNDDDKS EMEKLVVLYL  180
SGKPTESSID VLLRLLKNIV KEPENGKFRR VRMSNAKIKE AIGDVAGGVE LLELVGFELK  240
EENEEIWAVM EVPGEEQTQL IKKVVGILEN RKIEISGSSP QVSVAEEPVA PKKIDREIRV  300
FFSVSENVAS RIEVPDSFYS LTADEIKREA DLRRKKIAES QLLIPRSFRE KQAKAARKRY  360
KRSLIRVQFP DGVVLQGVFA PWEPTIALYE FVSSALKEPS LQFELLDPVL VKRRVIPHTP  420
APGQKSRTLE DEELVPSALI KFRPIETDSL VYTGLCNELL EISEPLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ifw_A3e-1431344223146Tether containing UBX domain for GLUT4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFacilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269|PubMed:19176722, ECO:0000269|PubMed:23301616, ECO:0000269|Ref.8}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004151m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269|PubMed:19176722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395865.10.0plant UBX domain-containing protein 2
SwissprotQ9ZU930.0PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBLV4MNI90.0V4MNI9_EUTSA; Uncharacterized protein
STRINGXP_006395865.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98351618
Publications ? help Back to Top
  1. Suzuki T,Park H,Till EA,Lennarz WJ
    The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway.
    Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7
    [PMID:11587532]
  2. Rancour DM,Park S,Knight SD,Bednarek SY
    Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48.
    J. Biol. Chem., 2004. 279(52): p. 54264-74
    [PMID:15498773]
  3. Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC
    Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction.
    Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45
    [PMID:23301616]