PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002961m
Common NameEUTSA_v10002961mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TCP
Protein Properties Length: 173aa    MW: 19196.2 Da    PI: 8.1008
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002961mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.34.2e-32161483105
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec....eaesssss 81 
                      +k ++++++h kvggRdRR+R++++ca ++F+L+++LGf++d++t+ WLl++a+pai ++tg+           s      +    ++ +++  
  Thhalv10002961m  16 KKAKSSKDRHLKVGGRDRRIRIPVSCASQLFQLTKKLGFKTDGETVGWLLKNAEPAISAATGDgvtttdndvinS------SgnhyTNCDNVI- 102
                      68899**********************************************************765444333320......111112222222. PP

              TCP  82 asnsssg............................kaaksaakskksqksaa 105
                            +                            +++  a+ +++ +++++
  Thhalv10002961m 103 ------SnnhfpymgvnyghhdsefpvptmmdpapSSSFPANDTRRMNHRTQ 148
                      ......0223334456666543344444444444322222222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.9E-2820137IPR005333Transcription factor, TCP
PROSITE profilePS5136924.3612175IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDSRNENNDN NRCPQKKAKS SKDRHLKVGG RDRRIRIPVS CASQLFQLTK KLGFKTDGET  60
VGWLLKNAEP AISAATGDGV TTTDNDVINS SGNHYTNCDN VISNNHFPYM GVNYGHHDSE  120
FPVPTMMDPA PSSSFPANDT RRMNHRTQAQ FQLDEELAAA EKAFVQSLKQ RE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00390DAPTransfer from AT3G45150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419068.11e-129hypothetical protein EUTSA_v10002961mg
SwissprotQ9M1U44e-47TCP16_ARATH; Transcription factor TCP16
TrEMBLV4L1K61e-129V4L1K6_EUTSA; Uncharacterized protein
STRINGscaffold_501366.15e-45(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157501016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45150.11e-41TCP domain protein 16