PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001872m
Common NameEUTSA_v10001872mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 298aa    MW: 33557 Da    PI: 8.2574
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001872mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.4e-06139158120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C+ C k+F+r  nL+ H+
  Thhalv10001872m 139 FSCHVCFKTFNRYNNLQMHM 158
                      89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.74E-5120161No hitNo description
Gene3DG3DSA:3.30.160.603.4E-4139158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.055139166IPR007087Zinc finger, C2H2
PROSITE patternPS000280141161IPR007087Zinc finger, C2H2
SuperFamilySSF576671.1E-5203243No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MESSQYEISS SSSPDKPRDC FQSLDLFPNL NQNPSNNNTL IEPLPLIDRI NLNSNLNLNP  60
KPSYVEEGEE EGEDVEMDVS LHIGLPGSCN SSNGAKLSKK KNGKEIITHD AGKEMENELS  120
GKAYWIPAVE QIIIGFTHFS CHVCFKTFNR YNNLQMHMWG HGSQYRKGPE SLKGTQPRAM  180
LGIPCYCCVE GCRNHIDHPR SKPLKDFRTL QTHYKRKHGQ KPYACRICGK LLAVKGDWRT  240
HEKNCGKRWV CVCGSDFKHK RSLKDHVKAF GPGHGPYPTG LFEEQASNSS VSENLFF*
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001872m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397425.20.0protein TRANSPARENT TESTA 1
SwissprotQ8VWG31e-179TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLV4LGG20.0V4LGG2_EUTSA; Uncharacterized protein
STRINGXP_006397425.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-161C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]