PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001860m
Common NameEUTSA_v10001860mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TCP
Protein Properties Length: 382aa    MW: 40196.6 Da    PI: 7.4426
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001860mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.42.1e-3753154489
              TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 
                       k++++++h kv+gR+RR+R++a caar+F+L++eL +++d++tieWLlqqa+pai+++tgt++++a+++  ++s +s++s+ s++        
  Thhalv10001860m  53 VKRPSKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSTGSTLSAPpsksapla 146
                      699****************************************************************999888888888876665544444444 PP

              TCP  89 .......k 89 
                             +
  Thhalv10001860m 147 flydgthN 154
                      44444430 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136926.5657111IPR017887Transcription factor TCP subgroup
PfamPF036341.2E-3557168IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEPHQNDIDH HHNQTTGSAQ LVPFMGPNSG SISATTTTTT NAVSTISAPK TIVKRPSKDR  60
HIKVDGRGRR IRMPAICAAR VFQLTRELQH KSDGETIEWL LQQAEPAIIA ATGTGTIPAN  120
FSTLNVSLRS TGSTLSAPPS KSAPLAFLYD GTHNNTSSDD PRKFIGRTAA QNAAVFGFQQ  180
QLYPPQHIMN ESNPLTKSFR EEALFKDPNL LDQEPGSSSP KPESEAPDQE SDLTRSRTQN  240
MIPPMWAVAA PTPASTNAGS AFWMLPVGGR GGGSAITQDP SQHMWAFNPG HYPSRIGSVQ  300
LGSMLVQQTV GGQQVGLGVA ESNNLGLFSG GGGGDGGYGG GGGSGGCVGL GMSLKQKAQR  360
HQQHQVSDTT EDQNPTIAGS P*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00614PBMTransfer from AT1G35560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001860m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397460.10.0transcription factor TCP23
SwissprotQ9LQF01e-151TCP23_ARATH; Transcription factor TCP23
TrEMBLV4LGJ90.0V4LGJ9_EUTSA; Uncharacterized protein
STRINGXP_006397460.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.11e-127TCP family protein