PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943487.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 333aa    MW: 36787.8 Da    PI: 4.8838
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943487.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.5e-12168210754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  XP_010943487.1 168 MAERRRRKRLNDRLSLLRSIVPKiS------KMDRTSILGDTIDYVKEL 210
                     89*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.85161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-15165227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-12167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9167210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.74E-5168215No hitNo description
Gene3DG3DSA:4.10.280.101.3E-14168224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00804259297No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MELDEQSLLE ELFAPRGKTW DTSPTGTTKL LFSTEGGTDC FPETPSPVSP DYAPFEGLSF  60
QPEPIFDCLS EVCCPFGSGF FSAAPDFQTS CTMMTHSTIS LLAQDNEEIG LIHEEKNSTL  120
YDEQQSNCKV EPGQTVHTPS VFGGAGPCLE RKNGRQKKVE GLASKNLMAE RRRRKRLNDR  180
LSLLRSIVPK ISKMDRTSIL GDTIDYVKEL LERIKSLQQE AKVGTDELNL LNTLNGVKPN  240
EMLPRNSPKF NVERREGDTR LEICCAAKPG LLLSTVSTLE ALGLEIQQCA VSCFNDFGMR  300
ACCSEDKEQR AIIGSEEIKQ ALLRTAGYGG KCV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169176ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943487.10.0transcription factor bHLH93 isoform X1
SwissprotQ9LSL15e-70BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A2H3Y1C61e-160A0A2H3Y1C6_PHODC; transcription factor bHLH93-like
STRINGXP_008806159.11e-132(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.19e-65beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]