PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943415.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 185aa    MW: 21109.2 Da    PI: 8.0639
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943415.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.75e-1476164498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     v+t+s v +  +l++pk+       + ++    ++ + ++++We+++  +++ +r  + +GWk+F+ +n+Lk gD + ++l++++  ++ v+++r
  XP_010943415.1  76 VMTKSQVQAPFQLTIPKSIWMLL--PFAC--VPVVLSYRNKTWEMRYYGDRNLRR--FDSGWKHFAVDNNLKIGDACFLELMDDQHLKFQVQILR 164
                     78888888888999998887222..2223..346678899*******55777777..8************************9999999**9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-1869164IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-1769164IPR015300DNA-binding pseudobarrel domain
CDDcd100173.59E-1671164No hitNo description
PfamPF023621.4E-1273165IPR003340B3 DNA binding domain
PROSITE profilePS5086311.26573166IPR003340B3 DNA binding domain
SMARTSM010194.4E-473166IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MWHSKDALSL AKQKTDHSVC SSNTHRRHCK APVAARSLSS QESTNRANLC LPSDSATIDE  60
KDEIVPLSGK PYFACVMTKS QVQAPFQLTI PKSIWMLLPF ACVPVVLSYR NKTWEMRYYG  120
DRNLRRFDSG WKHFAVDNNL KIGDACFLEL MDDQHLKFQV QILRGDIPRE IVESGCSFDT  180
PIMIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910571.21e-128B3 domain-containing protein Os04g0386900 isoform X1
RefseqXP_019701572.11e-126B3 domain-containing protein Os11g0197600
TrEMBLA0A2H3YR231e-106A0A2H3YR23_PHODC; B3 domain-containing protein Os04g0386900-like
STRINGXP_008802551.11e-107(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-09B3 family protein