PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943178.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 556aa    MW: 57325.6 Da    PI: 8.9204
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943178.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-056890123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_010943178.1 68 FVCEICNKGFQRDQNLQLHRRGH 90
                    89*******************88 PP

2zf-C2H2120.00067144166123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H +t+
  XP_010943178.1 144 WKCDKCSKKYAVQSDWKAHSKTC 166
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-56790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.86E-76790No hitNo description
PROSITE profilePS5015710.9496890IPR007087Zinc finger, C2H2
SMARTSM003550.0176890IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM00355210109139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.9E-4132165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.86E-7139164No hitNo description
SMARTSM00355150144164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MPVELENSSV MTFSNSGSGE ASVSSGQQQA PPPPPPPAKK KRNLPGMPDP DAEVIALSPK  60
TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT GKEARKRVYV CPEPSCVHHD  120
PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK AHSKTCGTRE YRCDCGTLFS  180
RRDSFITHRA FCDALAEESA KSQTNNTAAS APAAPENQKA EDDGKAAAAP APAPAPPAPE  240
KSLPPAAMPG AGLSRQLGAP PEQQREPENP PAGMLQYMPP APPPPPSSIT IGSNNSSGTT  300
SSSGGSSSGT STSLFASLFA SASATAAAQS TTFSDLIGAM SRTDRSLATE APSLCLSTNG  360
PASLFSQPPQ ERRPFLPPPP PPSPHMSATA LLQKAAQMGA AATSSSSFLR GFGLATSTAG  420
HPEGLNDGGF HWRPQQQQLE PEPTPILSAG LGLGLPYDTA AAAAAAAAGL PDLMMGPPPL  480
FGPKPATLDF LGLGMGPVGG AATGGLSALI TSIGGGGLDM GSGAAAAASA GRFGGGSSPG  540
KAWEGAERKP NSPAIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35140206371Zinc finger protein JACKDAW
5b3h_F2e-35140206371Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943180.10.0zinc finger protein ENHYDROUS
RefseqXP_019701497.10.0zinc finger protein ENHYDROUS
SwissprotQ9LVQ71e-154IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A2H3YAF90.0A0A2H3YAF9_PHODC; protein indeterminate-domain 2-like
STRINGXP_008795616.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-101C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]