PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010942676.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 208aa    MW: 21856.9 Da    PI: 10.5217
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010942676.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.81.9e-133177354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    r+h+e+Er+RR+riN  +++Lr+llP a      +++Ka+ L ++v+++++L
  XP_010942676.1 31 RSHSEAERKRRQRINGHLATLRSLLPAA-----ARMDKATLLGEVVRHVREL 77
                    79*************************8.....7***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.6312877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-142979IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-133083IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.36E-113178No hitNo description
PfamPF000104.4E-113177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-123483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.4E-5112179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MLAVGAGGVA AKEMDGGGAA PRSAAETKAH RSHSEAERKR RQRINGHLAT LRSLLPAAAR  60
MDKATLLGEV VRHVRELKGM ADDVAVVVPG EGDEVGVEEN GEGEERRVRA WVCCADRPGL  120
MGELSRAVGS VRARAVRAEM TTVGGRTRSV LEVEMMEVKG GGGEEGRPAA AALQAALRAV  180
LLAKGPGSDG RTAESFKRPR LASRFNTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13641ERKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010942676.11e-142transcription factor bHLH30-like
TrEMBLA0A2H3WXL81e-123A0A2H3WXL8_PHODC; transcription factor bHLH30
STRINGXP_008775224.11e-124(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.12e-19bHLH family protein