PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010942137.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 263aa    MW: 27801.6 Da    PI: 8.7533
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010942137.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025100122123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C++ F ++  L  H++ H
  XP_010942137.1 100 FPCNYCHRKFYSSQALGGHQNAH 122
                     89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.59E-697127No hitNo description
PROSITE profilePS5015711.261100127IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MESAGATTHS KATSSISNDK TIMVKAKEKE GAVGGGDPPE GNEILLDLGL SNKESDDGIL  60
SSAQPVLELD LIGSLDAAAS RTAVEAPAPP ESLASEQRVF PCNYCHRKFY SSQALGGHQN  120
AHKRERSLAK HGPRPGLSPA NHPMHCFPPS MAAAPLHGAF GWRPLGIQVH SMVHKPSFGV  180
VPKVGGLLNA KHGWCRPATS IINQQPAIRR LQIENFGACG AARGPVARFD EPAVATGGYR  240
WGGGNQMSVG KEEVQKLDLS LKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010942137.10.0zinc finger protein 1
TrEMBLA0A2H3Z4F71e-124A0A2H3Z4F7_PHODC; zinc finger protein 1-like
STRINGXP_008808241.11e-125(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.15e-34C2H2 family protein