PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010942001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 291aa    MW: 33061 Da    PI: 9.5221
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010942001.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.64e-19167200134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs C ttkTplWR+gp+g+k+LCnaCG+++rk +
  XP_010942001.1 167 CSDCSTTKTPLWRSGPQGPKSLCNACGIRQRKAR 200
                     *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.99E-13161204No hitNo description
SMARTSM004015.8E-20161212IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.9E-16165200IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.532165197IPR000679Zinc finger, GATA-type
CDDcd002023.08E-11166194No hitNo description
PROSITE patternPS003440167192IPR000679Zinc finger, GATA-type
PfamPF003207.6E-17167200IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MSPSNLNQSS LPLKKRNQDQ IHHLPNSTAT TNTSYPRPVL LETSIEDQGA NCREHHGHHY  60
HQQQQQEKPN EFVLIDGSSD FPQPTNTDDN NDKMDQYVCN GYHEDEDGHG SVKWMPSKMR  120
WMRKMVASEQ TVRSKPARRS MEDLQEEKQH NQDMSNSNFP SGTIRVCSDC STTKTPLWRS  180
GPQGPKSLCN ACGIRQRKAR RAMAAAATGS GLRATNTPRK VQKEKRRGRD HTIPNKKRCK  240
IDTTRTAQRK LEIDDIMMSL SNNSAFHRVF PQDETDAAIL LMALSCGLIH R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010942001.10.0putative GATA transcription factor 22
TrEMBLA0A2H3YF041e-155A0A2H3YF04_PHODC; putative GATA transcription factor 22
STRINGXP_008797761.18e-93(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.17e-30cytokinin-responsive gata factor 1