PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941959.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 652aa    MW: 71265 Da    PI: 6.8839
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941959.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.8e-17317376155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++t+e+Aa+a++ a++k++g
  XP_010941959.1 317 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDTEEKAARAYDLAALKYWG 376
                     78*******************988886678446*************************98 PP

2AP247.25.7e-15421470355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  XP_010941959.1 421 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 470
                     9***************999754...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-13317376IPR001471AP2/ERF domain
CDDcd000182.96E-23317384No hitNo description
SuperFamilySSF541711.63E-17317385IPR016177DNA-binding domain
SMARTSM003805.8E-31318390IPR001471AP2/ERF domain
PROSITE profilePS5103219.902318384IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-17318385IPR001471AP2/ERF domain
PRINTSPR003675.0E-6319330IPR001471AP2/ERF domain
CDDcd000188.57E-25419480No hitNo description
SuperFamilySSF541711.83E-17419479IPR016177DNA-binding domain
SMARTSM003805.9E-34420484IPR001471AP2/ERF domain
PROSITE profilePS5103219.164420478IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-18420478IPR001471AP2/ERF domain
PfamPF008471.4E-9421470IPR001471AP2/ERF domain
PRINTSPR003675.0E-6460480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MKSMNNNNWL GFSLSPHMSM EVSGDPHQQP SSQNHHHQSQ PTPAAVSSSS FFPSPSHLNS  60
SDICYGVGEN GGFYSQLSSM PLRSDGSLCI MEALSRSQQE GMVPSPSPKL EDFLGCGPNM  120
GTHQYGNSDR GAMALSLDSM YYRQNPEPEG NRGHPLDLLQ QPFKQHIHVQ QQQQQQQQQQ  180
PSPYFQPLQE GMCSLLPGHE MYQPPLEEET MTVDGIPGLK SWVSSSFSGG NNGLGGEGGV  240
GSGGPLGAMG YSDLQSLSLS MSPGSQSSCV TAPQNISPAA TNYYMALDGS KKRGTGKGGQ  300
KQPVHRKSID TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC KKEGQTRKGR QVYLGGYDTE  360
EKAARAYDLA ALKYWGPSTH INFPLEDYQE ELEEMKNMSR QEYVAHLRRK SSGFSRGASM  420
YRGVTRHHQH GRWQARIGRV SGNKDLYLGT FSTQEEAAEA YDIAAIKFRG VNAVTNFDIT  480
RYDVEKIMAS STLLAAELAR RNKDAEALND ALLARNSNRE LNLTEDNSSG GSDWKMSLYQ  540
SPQQTSPISE EHCEKLIPGG DAFSNPCYSA SLLGLVGMDA EGSAQAIGNS GNMGNAHLSN  600
ASSMVTSPDR SGLSMLFAGP PRKFINSTSV NSSIPSTQLR STMPVFAAWT DT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941959.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ389141e-163ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLF6H1730.0F6H173_VITVI; Putative uncharacterized protein
STRINGVIT_18s0001g08610.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-125AP2 family protein