PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941362.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 321aa    MW: 35521.5 Da    PI: 4.6947
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941362.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.9e-12155198654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  XP_010941362.1 155 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILSDTIDYMKEL 198
                     589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.29E-5142203No hitNo description
PROSITE profilePS5088815.18149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-16152219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9155198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-12155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-15156210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MELDELGFLE ELLALRGETW DTLPGGMNHE FFSSESSLDC FHENQSLVPP SFSAFEGLAA  60
PAEPNFDCLS EVYRLLGAGF AAAAPEIQSS SVQSPLEDGK VGPVVHGDRR EVVGDGQTVC  120
KVEMGPPAEA PVVLGMGGCS DRKKRRAEGL QSKNLMAERR RRKRLNDRLS MLRSIVPKIS  180
KMDRTSILSD TIDYMKELLE RIKGLQEEIE VGSEQPNLLG IFKELNPNDI LVRNSPKFDV  240
ERRDFDTRIE ICCTAKPGLL LSTVNTLEAL GLEIQQCVVS CFNDFGMQAS CSEDMKQRAV  300
INSEEIKQAL FRNAGYGGRC L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143163KRRAEGLQSKNLMAERRRRKR
2157164ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941362.10.0transcription factor bHLH93
SwissprotQ9LSL13e-80BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A2H3YZF60.0A0A2H3YZF6_PHODC; transcription factor bHLH93-like
STRINGXP_008806159.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-82beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]