PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940967.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TCP
Protein Properties Length: 448aa    MW: 48467.4 Da    PI: 7.3977
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940967.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.63.1e-40742173133
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec...eaessss 80 
                     g+kdrhsk++T++g+RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a +ai+el+ +              +     +    e++++ +
  XP_010940967.1  74 GGKDRHSKVYTAKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAIDELPVLdgtfpevpkphhpeE-----KPpqdEPDAEAE 163
                     79*************************************************************999988866433321.....223333444444 PP

             TCP  81 sasnsssgkaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                      + n++++ + +++ +s++s++s+ s+l+l++ e rakar rarer ++k + +
  XP_010940967.1 164 PGYNQQQHLSLSKSGCSSNSETSKGSVLSLSRsEIRAKARDRARERVKDKEKDR 217
                     44456666778888899999************99************99998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.9E-3974215IPR005333Transcription factor, TCP
PROSITE profilePS5136933.13475133IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.527196215IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MEMEENHACK RSRVGNGTAI SSSQAAKIGR KMQHHDDDDD DGEVRGGGAT AAESRVMSWH  60
HPSSRIFRVS RTSGGKDRHS KVYTAKGLRD RRVRLSVSTA IQFYDLQDRL GYDQPSKAIE  120
WLIKAAAAAI DELPVLDGTF PEVPKPHHPE EKPPQDEPDA EAEPGYNQQQ HLSLSKSGCS  180
SNSETSKGSV LSLSRSEIRA KARDRARERV KDKEKDRDDG HVAISHHQNV NPCLNSQTSF  240
TELLTGGSST NGADVATAQA NSSVNRLQKQ MQHLPAVTTT ADYFSQAGLF PQAQKSHQLP  300
SGFSSQAHFG NSSPMGMAPL NIAATAAGAG DHPEMQQFYF LQDHLMPASA MPPGPGDYNL  360
NFPISPGLAG FNRGTLQSNS PSQLPHHHLQ RLSSPVDGSN LPFFFSSAAS AAAATSTENQ  420
FSAGFDGRLQ LCYGDGYRHS DLKGKGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2680134155Putative transcription factor PCF6
5zkt_B2e-2680134155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00639PBMTransfer from Lj6g3v1946420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940957.10.0transcription factor PCF6
RefseqXP_010940963.10.0transcription factor PCF6
RefseqXP_010940967.10.0transcription factor PCF6
TrEMBLA0A2H3XJS10.0A0A2H3XJS1_PHODC; transcription factor PCF6-like
STRINGXP_008784856.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-45TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2