PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940911.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TCP
Protein Properties Length: 361aa    MW: 37169.8 Da    PI: 4.9002
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940911.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.28.9e-3662139783
             TCP   7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssas 83 
                     r++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlq a+pai+++tgt++ +a ++                ++
  XP_010940911.1  62 RSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQHAEPAIIAATGTGTVPAIATtvdgtlkiP-------TD 139
                     89*********************************************************88888444322222221.......22 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.41963117IPR017887Transcription factor TCP subgroup
PfamPF036346.4E-3063153IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDLQKQEEEE DEDSQRTDLR MGGGGRGAAM PVHHRLIVPK PEPMEFIGAG PLPFLKRRPA  60
GRSKDRHTKV EGRGRRIRMP AACAARIFQL TRELGHKSDG ETIRWLLQHA EPAIIAATGT  120
GTVPAIATTV DGTLKIPTDV SSFSGYTTSA GGEESARKKL QPTRATAVAA NGGGVAAVPY  180
CCPVAVTDPL LQGGGAISIS TGLAPIASVG AAPAGLVPMW AVGNTVGGRV IPPGALWMLP  240
PSSAIAAGPS TQQPQIWTFP TPPQIINLAG TGPVPAVFPG SVPGLNLVDA QPPPADGSAA  300
VGGKRGGDGA SAAGGAGKTQ ELQLMGESVA SQHGQEAEEQ RQEPEEEEED EEPLSESSPE  360
D
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940911.10.0transcription factor PCF2
SwissprotA2YXQ13e-72PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH63e-72PCF2_ORYSJ; Transcription factor PCF2
TrEMBLA0A2H3Z7Y91e-172A0A2H3Z7Y9_PHODC; transcription factor PCF2-like
STRINGXP_008809784.11e-172(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-47TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]