PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940760.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 320aa    MW: 35277.3 Da    PI: 8.4868
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940760.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.72.6e-07169191123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ Cgk F+r  nL+ H+r H
  XP_010940760.1 169 HYCQVCGKGFKRDANLRMHMRAH 191
                     68*******************99 PP

2zf-C2H212.90.00032265288123
                     EEETTTT.EEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                     y+C+ C+ k+Fs  s+L++H + +
  XP_010940760.1 265 YVCNRCNqKTFSVLSDLRTHEKHC 288
                     9*******************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.09E-6167203No hitNo description
SMARTSM003550.0034169191IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.7E-7169196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.653169196IPR007087Zinc finger, C2H2
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
SMARTSM0035562227260IPR015880Zinc finger, C2H2-like
SMARTSM0035517265287IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MMLGGTPFFQ NNNPQGFRMD EGVEDSILSS SACPNPGAGI HSQTLWYNLS VLRDKVQQVQ  60
SLVSLVVSPD PIQQESLALA ASGAAAIIQE IIVAASSMMY ALQHSAAGDI SHPHDMKTSY  120
EGSAQSKGTP DHIDRVFNEL EGGRMGILGS PSSNVIELDT ADLLAKYTHY CQVCGKGFKR  180
DANLRMHMRA HGDEYKTNAA LCNPMKGSRG SIMGQKDDPP FGLPRKYSCP QEGCRWNKNH  240
AKFQPLKSVI CVKNHYKRSH CPKMYVCNRC NQKTFSVLSD LRTHEKHCGD LKWMCSCGTT  300
FSRKDKLMGH VALFVGHTPI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019710962.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
SwissprotQ0WT241e-100STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A2H3XRL31e-157A0A2H3XRL3_PHODC; protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
STRINGXP_008787557.11e-158(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.14e-88C2H2 family protein