PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940117.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 152aa    MW: 16778.1 Da    PI: 10.2521
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940117.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.81.2e-0544821255
                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  XP_010940117.1 44 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 82
                    7788999*********998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.7193281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-114293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.55E-64286No hitNo description
Gene3DG3DSA:4.10.280.108.1E-104689IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MPPLVSGVAE AKRGNSILEH RASHTAPKKP RFESRSSFSP FKVRKEKLGD RIAALQQLVA  60
PFGKTDTASV LMEAIGYIKF LQHQVETLSV PYMKSSNNKK SRTTQAVPDE DRDESKLDLR  120
SRGLCLVPLS CTSYVTSDNG GVWSPPNYRG NA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940117.11e-110transcription factor bHLH110
SwissprotQ9SFZ38e-52BH110_ARATH; Transcription factor bHLH110
TrEMBLA0A2H3YAU94e-93A0A2H3YAU9_PHODC; transcription factor bHLH110
STRINGXP_008795968.17e-94(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-43bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]