PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939992.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 230aa    MW: 25225 Da    PI: 6.6241
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939992.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002987109123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  XP_010939992.1  87 FSCNYCQRKFFSSQALGGHQNAH 109
                     89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.82E-684114No hitNo description
PROSITE profilePS5015711.34487114IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MNTSNHIEAS EDVSEVSSQV ASNISLQQSF PCHNEEGVPI SLQPTSLDLS LTVKLDSSSP  60
AVISLSSTSE SSSDTRACNA PNPRRVFSCN YCQRKFFSSQ ALGGHQNAHK RERTLAKRAL  120
RMDAFPYAYG SIASLPLNGS VFHSLGIKAH SSVHRGMVNE RQESRSSPRF ARGLLGPMPD  180
FAEDDEVNFY WPGSFRPSTN SGFELMGNPN LNRSTSDPLT VEELDLTLRL
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939989.11e-169zinc finger protein 4
RefseqXP_010939990.11e-169zinc finger protein 4
RefseqXP_010939991.11e-169zinc finger protein 4
RefseqXP_010939992.11e-169zinc finger protein 4
RefseqXP_029124348.11e-169zinc finger protein 4
RefseqXP_029124349.11e-169zinc finger protein 4
SwissprotQ392634e-38ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A2H3XS291e-128A0A2H3XS29_PHODC; zinc finger protein 4-like
STRINGXP_008787905.11e-129(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.14e-40zinc finger protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]