PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939919.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 614aa    MW: 67172.5 Da    PI: 6.7047
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939919.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.11.2e-14290349155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a +k++g
  XP_010939919.1 290 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLASLKYWG 349
                     78*******************655454478446************************998 PP

2AP247.83.7e-15392443155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_010939919.1 392 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 443
                     78****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-17290359IPR016177DNA-binding domain
PfamPF008472.7E-11290349IPR001471AP2/ERF domain
CDDcd000184.29E-21290359No hitNo description
Gene3DG3DSA:3.30.730.105.5E-16291358IPR001471AP2/ERF domain
PROSITE profilePS5103219.072291357IPR001471AP2/ERF domain
SMARTSM003809.2E-28291363IPR001471AP2/ERF domain
PRINTSPR003673.6E-6292303IPR001471AP2/ERF domain
PfamPF008475.4E-10392443IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18392453IPR016177DNA-binding domain
CDDcd000182.21E-24392453No hitNo description
Gene3DG3DSA:3.30.730.103.5E-18393451IPR001471AP2/ERF domain
SMARTSM003806.3E-33393457IPR001471AP2/ERF domain
PROSITE profilePS5103219.072393451IPR001471AP2/ERF domain
PRINTSPR003673.6E-6433453IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MEMSGWLGFS LSSCKGESSC CCDEGFGGGA EGGGDGGEVG FHHPWAGMPL RSDGSICLME  60
LPLRPPPPPH GASDWRYGST MATASTSSNQ EGEGPKLEDF LGGYSENADE ENQSHHPVSN  120
YHDMYYQSSD GPGINVNMPP SFSPDETRAE EDIHNSYHFP QAFHQPNHSF QEIPTLKPQL  180
LVPNPNPNPT PFPNSMYNGG LDGSTSISGI KSWLRQNQYV PEKQLAEPSE CNIQCLTLSM  240
SPGMHSVSSE MVPVSSSPAA AVRPKCPNTK SAAREPVPRK SIETFGQRTS QYRGVTRHRW  300
TGRYEAHLWD NSCRKEGQTR KGRQVYLGGY DKEEKAARAY DLASLKYWGP AAHINFPLST  360
YEKELEEMKH MSRQEFVANL RRKSSGFSRG ASVYRGVTRH HQHGRWQARI GRVAGNKDLY  420
LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DISRYDVKRI CSSSHLITGD LAKRSPSATP  480
TPSEPTDADR PARVIANSGS NDIDDFSDML WNSKAEPCSS PPQLLNSVSL ISVSNPNSVA  540
NKAESPRNAG VNQKACGDFP QAFYFPHGMK VEGGENGNVG GGTDGNMKWM VAAAARTSGL  600
PVAHQLPMFA LWNE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939919.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-131AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLM0S2030.0M0S203_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P21950_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-121AP2 family protein