PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939660.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 363aa    MW: 39477.4 Da    PI: 6.7091
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939660.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.82.3e-07158179223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C++Cgk F+r  nL+ H+r H
  XP_010939660.1 158 FCEICGKGFKRDANLRMHMRAH 179
                     6*******************99 PP

2zf-C2H213.70.00018248271123
                     EEETTTT.EEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                     y+C+ C+ ksFs + +Lk+H++ +
  XP_010939660.1 248 YSCHRCNkKSFSVPADLKNHLKHC 271
                     99*******************977 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.75E-6154180No hitNo description
SMARTSM003550.0015157179IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-5157179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.718157184IPR007087Zinc finger, C2H2
PfamPF128740.002158177No hitNo description
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
SMARTSM00355160210243IPR015880Zinc finger, C2H2-like
SMARTSM0035513248270IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MIGSGCRNPG QTSAGIDPSS AARDGDSRPA PMARSDPRLP LLNLSVLGQK MESLSRVLSD  60
SIGRRAPLDD DQLQLVSAEI ASAVHQTILN GAALLACSHP VDLAPTSAID PAAGKLADQI  120
GSDPDPSSSA PDDGDAAEED GDIVEIDVAE LLAEHIHFCE ICGKGFKRDA NLRMHMRAHG  180
NRFKTLEALS KPPDRDRHQP DDGGGRKLRF SCPSVGCNRN RHHSRFRPLK SAVCVKNHFK  240
RSHCPKMYSC HRCNKKSFSV PADLKNHLKH CGESRWRCSC GTSFSRKDKL FGHVALFEGH  300
LPAVGTEEEE EEKGKEKELV AGGGEDIGRG GDEPVGEEGL DPEFFRRLMK ELEGMEGVNW  360
PAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939660.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A2H3XYY50.0A0A2H3XYY5_PHODC; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
STRINGXP_008790878.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.12e-66C2H2 family protein