PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939527.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 391aa    MW: 42419.5 Da    PI: 4.868
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939527.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.31.4e-11209265155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++ k++g+++A+++d  s+  g krk  + g+++++e+Aa+a++ a++k++g
  XP_010939527.1 209 SSYHGVTRLKWSGKFEAHLWDnRSQvEGrKRKGKH-GSYDSEEKAARAHDLAALKYWG 265
                     679******************66668777778888.********************98 PP

2AP252.71.1e-16310363155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++k +g+W A+I  +   g  r  k ++lg+f+t+eeAa+a++ a+ +l+g
  XP_010939527.1 310 SIYRGVTRRK-DGKWQARIGRV---GdSRdaKDIYLGTFDTEEEAAEAYDIAAIELRG 363
                     57*****999.9*******997...443347*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-12209276IPR016177DNA-binding domain
PfamPF008471.4E-8209265IPR001471AP2/ERF domain
CDDcd000183.37E-13209277No hitNo description
Gene3DG3DSA:3.30.730.105.3E-11210276IPR001471AP2/ERF domain
PROSITE profilePS5103216.713210275IPR001471AP2/ERF domain
SMARTSM003802.5E-16210281IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-18310373IPR016177DNA-binding domain
PfamPF008478.1E-11310363IPR001471AP2/ERF domain
CDDcd000183.98E-23310373No hitNo description
Gene3DG3DSA:3.30.730.101.8E-19311371IPR001471AP2/ERF domain
PROSITE profilePS5103219.335311371IPR001471AP2/ERF domain
SMARTSM003809.2E-29311377IPR001471AP2/ERF domain
PRINTSPR003671.5E-5312323IPR001471AP2/ERF domain
PRINTSPR003671.5E-5337353IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MVKGKSLDLA QMSEEKRSPD PSEDPEPSKN PASLLPSLDD SGERSESNAA GEKVAAESSE  60
ASGHQEDAAH KVDSVANAAA EEKSDPLEAT VAEKAESLEE AATGEERVRS DVPSRNSEDH  120
DEKKADSSDA ADGSGLVVAL YVPIFDKSSS RSGEELNATS TDAEKAEIVE VTNGGSSVDA  180
MAGPGKNPEK KVGTLLAAAM KKYAAPRSSS YHGVTRLKWS GKFEAHLWDN RSQVEGRKRK  240
GKHGSYDSEE KAARAHDLAA LKYWGPNPNT KLNFPVSDYE KELETMQTMC QEEYVAYVRR  300
KSSCFSRGAS IYRGVTRRKD GKWQARIGRV GDSRDAKDIY LGTFDTEEEA AEAYDIAAIE  360
LRGVHAVTNF DISNYCEGGL KRLEGPCKLE T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939527.10.0PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 isoform X2
SwissprotQ5YGP76e-71PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBLK3ZJF31e-118K3ZJF3_SETIT; Uncharacterized protein
STRINGSi026706m1e-118(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.17e-61AINTEGUMENTA-like 5