PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939526.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 394aa    MW: 42795 Da    PI: 4.868
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939526.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2476.4e-15209268155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++ k++g+++A+++d  s+  g  ++ k+++lg+++++e+Aa+a++ a++k++g
  XP_010939526.1 209 SSYHGVTRLKWSGKFEAHLWDnRSQvEGrkRKgKHVYLGSYDSEEKAARAHDLAALKYWG 268
                     679******************666696665336*************************98 PP

2AP252.71.1e-16313366155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++k +g+W A+I  +   g  r  k ++lg+f+t+eeAa+a++ a+ +l+g
  XP_010939526.1 313 SIYRGVTRRK-DGKWQARIGRV---GdSRdaKDIYLGTFDTEEEAAEAYDIAAIELRG 366
                     57*****999.9*******997...443347*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.14E-16209280No hitNo description
SuperFamilySSF541713.2E-15209279IPR016177DNA-binding domain
PfamPF008472.4E-12209268IPR001471AP2/ERF domain
PROSITE profilePS5103218.241210278IPR001471AP2/ERF domain
SMARTSM003806.1E-23210284IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-14210279IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-18313376IPR016177DNA-binding domain
CDDcd000183.78E-23313376No hitNo description
PfamPF008478.2E-11313366IPR001471AP2/ERF domain
PROSITE profilePS5103219.335314374IPR001471AP2/ERF domain
SMARTSM003809.2E-29314380IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-19314374IPR001471AP2/ERF domain
PRINTSPR003671.6E-5315326IPR001471AP2/ERF domain
PRINTSPR003671.6E-5340356IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MVKGKSLDLA QMSEEKRSPD PSEDPEPSKN PASLLPSLDD SGERSESNAA GEKVAAESSE  60
ASGHQEDAAH KVDSVANAAA EEKSDPLEAT VAEKAESLEE AATGEERVRS DVPSRNSEDH  120
DEKKADSSDA ADGSGLVVAL YVPIFDKSSS RSGEELNATS TDAEKAEIVE VTNGGSSVDA  180
MAGPGKNPEK KVGTLLAAAM KKYAAPRSSS YHGVTRLKWS GKFEAHLWDN RSQVEGRKRK  240
GKHVYLGSYD SEEKAARAHD LAALKYWGPN PNTKLNFPVS DYEKELETMQ TMCQEEYVAY  300
VRRKSSCFSR GASIYRGVTR RKDGKWQARI GRVGDSRDAK DIYLGTFDTE EEAAEAYDIA  360
AIELRGVHAV TNFDISNYCE GGLKRLEGPC KLET
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939526.10.0PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 isoform X1
SwissprotQ5YGP71e-75PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBLK3Y9551e-123K3Y955_SETIT; Uncharacterized protein
STRINGSi010747m1e-123(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78643548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-65AINTEGUMENTA-like 5