PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939190.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TCP
Protein Properties Length: 347aa    MW: 39090 Da    PI: 8.4661
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939190.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.12.8e-2970179389
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 
                     g+kdrhsk+ T +g+RdRRvRls++ a++++dLqd+LG+ ++sk ++WLl++a+++i++l+ ++ +++ +  + s+s ++s++ ++         
  XP_010939190.1  70 GGKDRHSKVRTIKGLRDRRVRLSVPAAIQLYDLQDKLGLNQPSKVVDWLLNAAQHEIDKLPPLQLPPEFFI-QFSQSMATSHKLAPnkapsflpf 163
                     78*************************************************************88888555.33333333322222233445555 PP

             TCP  89 ...............k 89 
                                    +
  XP_010939190.1 164 rdgaelvyddrarqlA 179
                     5555555444444331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.59671129IPR017887Transcription factor TCP subgroup
PfamPF036344.4E-2871201IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MIFALTGNPQ LQLTNCLQSD ESITMIRDSR EEELLTKQGG GTNDDRFAVS SRLWSALKNP  60
RIVRVSRTFG GKDRHSKVRT IKGLRDRRVR LSVPAAIQLY DLQDKLGLNQ PSKVVDWLLN  120
AAQHEIDKLP PLQLPPEFFI QFSQSMATSH KLAPNKAPSF LPFRDGAELV YDDRARQLAS  180
SSTMANGDML DNNTGANEMM VQKSTFWSSN VLMKNKEKAT MKEPNIDKGS MIKGNDVGSD  240
GMQNNAMYTS YHHWNPPNEH ISHLGSHLPQ EEELHNYQPG SMFAAYMNAS TDFAKQYHHL  300
DMANSASKFL PSTSLRNSLQ FTGDPSLKLL QPNFGFKHHH PQDHQEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1876130155Putative transcription factor PCF6
5zkt_B4e-1876130155Putative transcription factor PCF6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939190.10.0transcription factor TCP13 isoform X2
TrEMBLA0A2H3XZZ90.0A0A2H3XZZ9_PHODC; transcription factor TCP13-like
STRINGXP_008791353.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5